Document Type
Article
Journal Title
Nature Communications
Publication Date
2022
Volume
13
Abstract
Although microbial populations in the gut microbiome are associated with COVID-19 severity, a causal impact on patient health has not been established. Here we provide evidence that gut microbiome dysbiosis is associated with translocation of bacteria into the blood during COVID-19, causing life-threatening secondary infections. We first demonstrate SARS-CoV-2 infection induces gut microbiome dysbiosis in mice, which correlated with alterations to Paneth cells and goblet cells, and markers of barrier permeability. Samples collected from 96 COVID-19 patients at two different clinical sites also revealed substantial gut microbiome dysbiosis, including blooms of opportunistic pathogenic bacterial genera known to include antimicrobial-resistant species. Analysis of blood culture results testing for secondary microbial bloodstream infections with paired microbiome data indicates that bacteria may translocate from the gut into the systemic circulation of COVID-19 patients. These results are consistent with a direct role for gut microbiome dysbiosis in enabling dangerous secondary infections during COVID-19.
MeSH Headings
Mice, Animals, Dysbiosis, Gastrointestinal Microbiome, COVID-19, Anti-Bacterial Agents, Coinfection, SARS-CoV-2, Bacteria, Bacteremia
DOI Link
ISSN
2041-1723
Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 International License.
Recommended Citation
Bernard-Raichon, Lucie; Venzon, Mericien; Klein, Jon; Axelrad, Jordan E.; Zhang, Chenzhen; Sullivan, Alexis P.; Hussey, Grant A.; Casanovas-Massana, Arnau; Noval, Maria G.; Valero-Jimenez, Ana M.; Gago, Juan; Putzel, Gregory; Pironti, Alejandro; Wilder, Evan; Yale IMPACT Research Team; Thorpe, Lorna E.; Littman, Dan R.; Dittmann, Meike; Stapleford, Kenneth A.; Shopsin, Bo; Torres, Victor J.; Ko, Albert I.; Iwasaki, Akiko; Cadwell, Ken; Schluter, Jonas; Obaid, Abeer; Lu-Culligan, Alice; Nelson, Allison; Brito, Anderson; Nunez, Angela; Martin, Anjelica; Watkins, Annie; Geng, Bertie; Kalinich, Chaney; Harden, Christina; Todeasa, Codruta; Jensen, Cole; Kim, Daniel; McDonald, David; Shepard, Denise; Courchaine, Edward; White, Elizabeth B.; Song, Eric; Silva, Erin; Kudo, Eriko; Deluliis, Giuseppe; Rahming, Harold; Park, Hong-jai; Matos, Irene; Nouws, Jessica; Valdez, Jordan; Fauver, Joseph R.; Lim, Joseph; Rose, Kadi-Ann; Anastasio, Kelly; Brower, Kristina; Glick, Laura; Sharma, Lokesh; Sewanan, Lorenzo; Knaggs, Lynda; Minasyan, Maksym; Batsu, Maria; Petrone, Mary; Kuang, Maxine; Nakahata, Maura; Campbell, Melissa; Linehan, Melissa; Askenase, Michael H.; Simonov, Michael; Smolgovsky, Mikhail; Sonnert, Nicole; and Naushad, Nida, "Gut Microbiome Dysbiosis in Antibiotic-Treated COVID-19 Patients is Associated with Microbial Translocation and Bacteremia" (2022). Journal Articles: Epidemiology. 173.
https://digitalcommons.unmc.edu/coph_epidem_articles/173
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Gut_microbiome_dysbiosis_in_antibiotic-treated_supplement3.xlsx (19 kB)
Gut_microbiome_dysbiosis_in_antibiotic-treated_supplement4.xlsx (14 kB)
Gut_microbiome_dysbiosis_in_antibiotic-treated_supplement5.pdf (316 kB)